rs27654408 SNP Detail

Summary

• ID
  rs27654408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181217603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG GGCTACACAG AGAAACACTG TCTGGAAAAA AAAAAAAAAA AAAGGCAATA
  AGGAAGGCTG GAATCCTATG AAGAATTTAC TTCTTCTCAG TATGACCCCT TCTGTCTTGG
  CAATGTGTGT ATGTGCACAT ATACATGTGC ATGTGGTAGT GGTTTAAGAT CATGACATGA
  R
  ACCAACAGAG GGTGTAAGAG GGAAATTTAA CCCAAGAAGG TAAAATCAGA TCTGTACCTG
  TGCACACTTA CAGCCTACCA CTCATGCTAG TGGGCACTCA GAACCATGCT GACATTTCAG
  TGGGTCTGTA TCCCTAAAGG GGTGCCATTT CTGGCCATAG TCTTCAAATC TGAGAATGAG
  CAACTTCTAC TGAAGTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850628	NES08686857	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654408					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850628	NES08686857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181217603 () rs orientation: forward

Symbol	Name	Function Class
Rr573033	regulatory region 573033	895 bp proximal
Rr573034	regulatory region 573034	1389 bp proximal
Uckl1	uridine-cytidine kinase 1-like 1	Intron