rs27654409 SNP Detail

Summary

• ID
  rs27654409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181217533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTACACAG AGAAACACTG TCTGGAAAAA AAAAAAAAAA
  AAAGGCAATA AGGAAGGCTG GAATCCTATG AAGAATTTAC TTCTTCTCAG TATGACCCCT
  Y
  CTGTCTTGGC AATGTGTGTA TGTGCACATA TACATGTGCA TGTGGTAGTG GTTTAAGATC
  ATGACATGAA ACCAACAGAG GGTGTAAGAG GGAAATTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850629	NES08686856	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	T	C	T	T	C	C
ss148402251	ENSMUSSNP626734	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654409					SNP	T	C	T	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850629	NES08686856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181217533 () rs orientation: forward

Symbol	Name	Function Class
Rr573033	regulatory region 573033	965 bp proximal
Rr573034	regulatory region 573034	1459 bp proximal
Uckl1	uridine-cytidine kinase 1-like 1	Intron