rs27663372 SNP Detail

Summary

• ID
  rs27663372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6396659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTTATC CTGAACACCC
  AGTAGTCTTC AAACTGTTGT CATGGTTGAT AGTTCTCTGT CCTTTCCCCT AACACTGCCA
  TGTTATATCT GCTTAATGGA TGACAACAAA TGGCTCTGAA TGAAGTCACC ATGATTTAGG
  AAGTTGAAAC CACACATTCT TCATGTGGTA AAACTTCTAA GTACTATCAT TGCACATTCA
  S
  CAGTTTAAAG TCTGGTTTAA AATACATTAA GTAGAATTGT ACTTGATGGA GAGGAAAAGG
  CACTTAATAC TGCAATTTCC AGAACATAAT TTGTCTGTCT TCCCCTCCGG TGATAATACT
  GCTACACTGT TCGTTCATCC ACATGCATGT CACAGCACCT GAAAGACATC TCTGTTAGCA
  GGTCAACCAA ATGCAGATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37867591	NES08667611	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C		G	C	C	C	C	C	C	G
ss45620255	mCV22884914	ABI	CRAMUS_MOUSE	f	SNP		C	G			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27663372					SNP	C	C	G	C	C	C	G	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867591	NES08667611	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6396659 () rs orientation: forward

Symbol	Name	Function Class
Nsmaf	neutral sphingomyelinase (N-SMase) activation associated factor	within coordinates
Sdcbp	syndecan binding protein	539 bp downstream
Tssr36399	transcription start site region 36399	1907 bp downstream
Tssr36400	transcription start site region 36400	1749 bp downstream
Tssr36401	transcription start site region 36401	1693 bp downstream