rs27663382 SNP Detail

Summary

• ID
  rs27663382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6394573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTATCAG TTCCTTAGAT
  CCGAGATCAT TCATCGATGA CAATAGGATA GGGCTAAGCT GGAATTGGGG TTGTCTTAAA
  TTACCATGGC CTTCTTGAAA CTAGATGTGA GTTACATGAT GAGTTGCTCT CTTGTAGGAT
  GGCTCCCAGC ATTATGAAAA GCCTGATGGA TCACACCATT CCTGAAGTTT AAACCCTTGT
  M
  CAATGCATCA CGGCTGAATG TTTCCAGTTT TCCTCTTCGG CAACTTGTCT ATTTCGCACA
  TGAAGCTTTC CCGGAGCCAG GGAGAATATG CTGCATGGAG ACCTTTCTCT CTTCTCTCAT
  AGCTGGGAAC CCGCTCTATC TGATACTGGC TTCAGATTTT AAGATGGGTG TAGCCTTAGC
  CTGGTTTTAC AGATGTGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867602	NES08667677	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A		A	A	A	A	A	A	C	A	A
ss45569830	mCV22884921	ABI	CRAMUS_MOUSE	f	SNP		A	C			A		A
ss145961248	ENSMUSSNP6312951	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27663382					SNP	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867602	NES08667677	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6394573 () rs orientation: forward

Symbol	Name	Function Class
Nsmaf	neutral sphingomyelinase (N-SMase) activation associated factor	1634 bp downstream
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	1402 bp downstream
Tssr36397	transcription start site region 36397	872 bp downstream
Tssr36398	transcription start site region 36398	51 bp upstream
Tssr36399	transcription start site region 36399	159 bp upstream
Tssr36400	transcription start site region 36400	285 bp upstream
Tssr36401	transcription start site region 36401	341 bp upstream