rs27663384 SNP Detail

Summary

• ID
  rs27663384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6394407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC TTAGATCCGA GATCATTCAT
  Y
  GATGACAATA GGATAGGGCT AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37867604	NES08667675	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		C	C	T		T	T	C		C
ss45648987	mCV22884922	ABI	CRAMUS_MOUSE	f	SNP		T	C			C		C
ss145961245	ENSMUSSNP6053333	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss321036027	CHEV_4_6321554	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27663384					SNP	T	T	C	C	T	C	C	C	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867604	NES08667675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6394407 () rs orientation: forward

Symbol	Name	Function Class
Nsmaf	neutral sphingomyelinase (N-SMase) activation associated factor	1800 bp downstream
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	1236 bp downstream
Tssr36397	transcription start site region 36397	706 bp downstream
Tssr36398	transcription start site region 36398	217 bp upstream
Tssr36399	transcription start site region 36399	325 bp upstream
Tssr36400	transcription start site region 36400	451 bp upstream
Tssr36401	transcription start site region 36401	507 bp upstream