rs27663385 SNP Detail

Summary

• ID
  rs27663385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6394375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGTAGGG AAAGGGGTTG
  ATTATTTTAC AGTCTTTTGT TCTTTTAAAT TACTGGTAGG TTCCTTATGC CCCTTTCTGA
  CTCGTCACAG CCTTGCTGCT TCAATGAAAG AGCCAGTCGT AGTGTAAAGG ATGCACACCT
  TCTCTAACAG CCATCCCTGA TGTAAATAGC TATTCTTTCT GGACAGTTTC TGACAACTTG
  R
  TTATCAGTTC CTTAGATCCG AGATCATTCA TCGATGACAA TAGGATAGGG CTAAGCTGGA
  ATTGGGGTTG TCTTAAATTA CCATGGCCTT CTTGAAACTA GATGTGAGTT ACATGATGAG
  TTGCTCTCTT GTAGGATGGC TCCCAGCATT ATGAAAAGCC TGATGGATCA CACCATTCCT
  GAAGTTTAAA CCCTTGTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867605	NES08667674	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A		A	A	A	A	A	A	A	A	G
ss45602826	mCV22884923	ABI	CRAMUS_MOUSE	f	SNP		A	G			A		A
ss145961240	ENSMUSSNP5923108	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27663385					SNP	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867605	NES08667674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6394375 () rs orientation: forward

Symbol	Name	Function Class
Nsmaf	neutral sphingomyelinase (N-SMase) activation associated factor	1832 bp downstream
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	1204 bp downstream
Tssr36397	transcription start site region 36397	674 bp downstream
Tssr36398	transcription start site region 36398	249 bp upstream
Tssr36399	transcription start site region 36399	357 bp upstream
Tssr36400	transcription start site region 36400	483 bp upstream
Tssr36401	transcription start site region 36401	539 bp upstream