rs27663387 SNP Detail

Summary

• ID
  rs27663387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6393988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAGCTT GCAGGTCTTG
  TGCATATTAG AAATCTAGTC ATGGTGGTTC CTGACGGATT GCTTGCCTGT GAGGTAGTAA
  GAGTGGCTGT TGCTATTCTT TCCCGTATCC TAGCCAGTAG AGCGGTACCC GGTGCTTGCT
  ATCTATCTAT TGGAACTGAG GAGTGTAGAG TCCAGGAGAG CTGATAAAGG CCGGCAAGGG
  Y
  GATTCATTCC AGAGCCTTTC AGCTCCTATG CTCCTTCATC GCTGTTACCA TGCTACCTTG
  GAAACTTCTT CCAAAGTCCT GATATAGCAC ATGAAAGTGA GATTTGGAAT AGACATAAAC
  ATAACCTTTG TAATGCAATT TTTGTCTATA TTTTTGGGTT TTGGGTAGAA TGCAGCTAGC
  TACCCTCGGA GTAGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37867607	NES08667672	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T	C	T	T	T	T	C	C
ss45704507	mCV22884934	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss145961231	ENSMUSSNP4985736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27663387					SNP	T	T	C	C	T	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867607	NES08667672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6393988 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	817 bp downstream
Tssr36397	transcription start site region 36397	287 bp downstream
Tssr36398	transcription start site region 36398	636 bp upstream
Tssr36399	transcription start site region 36399	744 bp upstream
Tssr36400	transcription start site region 36400	870 bp upstream
Tssr36401	transcription start site region 36401	926 bp upstream