rs27663389 SNP Detail

Summary

• ID
  rs27663389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6393898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTTTAT CTTCGAACAC
  ATTATTAAAC GGTAAGTGAA TAGCTCTTCA ACTTTATGAT CTCCAGCACC TGATATAAAT
  GTGAACAGTG CTTTGAGCTT GCAGGTCTTG TGCATATTAG AAATCTAGTC ATGGTGGTTC
  CTGACGGATT GCTTGCCTGT GAGGTAGTAA GAGTGGCTGT TGCTATTCTT TCCCGTATCC
  Y
  AGCCAGTAGA GCGGTACCCG GTGCTTGCTA TCTATCTATT GGAACTGAGG AGTGTAGAGT
  CCAGGAGAGC TGATAAAGGC CGGCAAGGGT GATTCATTCC AGAGCCTTTC AGCTCCTATG
  CTCCTTCATC GCTGTTACCA TGCTACCTTG GAAACTTCTT CCAAAGTCCT GATATAGCAC
  ATGAAAGTGA GATTTGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37867609	NES08667670	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	T	T	T	T	C	T
ss45637754	mCV22884935	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T
ss145961227	ENSMUSSNP5388294	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27663389					SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867609	NES08667670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6393898 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	727 bp downstream
Tssr36397	transcription start site region 36397	197 bp downstream
Tssr36398	transcription start site region 36398	726 bp upstream
Tssr36399	transcription start site region 36399	834 bp upstream
Tssr36400	transcription start site region 36400	960 bp upstream
Tssr36401	transcription start site region 36401	1016 bp upstream