rs27663390 SNP Detail

Summary

• ID
  rs27663390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6393842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTGCA GATATACTGT
  CAACAGCTGG GACTGTGGTT ACCATCACAA TCATGCCTAC TTTTATCTTC GAACACATTA
  TTAAACGGTA AGTGAATAGC TCTTCAACTT TATGATCTCC AGCACCTGAT ATAAATGTGA
  ACAGTGCTTT GAGCTTGCAG GTCTTGTGCA TATTAGAAAT CTAGTCATGG TGGTTCCTGA
  Y
  GGATTGCTTG CCTGTGAGGT AGTAAGAGTG GCTGTTGCTA TTCTTTCCCG TATCCTAGCC
  AGTAGAGCGG TACCCGGTGC TTGCTATCTA TCTATTGGAA CTGAGGAGTG TAGAGTCCAG
  GAGAGCTGAT AAAGGCCGGC AAGGGTGATT CATTCCAGAG CCTTTCAGCT CCTATGCTCC
  TTCATCGCTG TTACCATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867610	NES08667669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27663390					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867610	NES08667669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6393842 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	671 bp downstream
Tssr36397	transcription start site region 36397	141 bp downstream
Tssr36398	transcription start site region 36398	782 bp upstream
Tssr36399	transcription start site region 36399	890 bp upstream
Tssr36400	transcription start site region 36400	1016 bp upstream
Tssr36401	transcription start site region 36401	1072 bp upstream