rs27663393 SNP Detail

Summary

• ID
  rs27663393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6392940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATTTGG GAGAAAGGTC
  TTGTCTTTGT GGTTTTAGAA AAGTGATTAG TGTCTGTACA CCTTCTAGAG TAATATGGAA
  CAGTATAGCT ATAATAGTTA GAAACACCAC TTTCTGTATC AAAATATCCC ATGTGGCAGA
  GTTTGTAGGT ATGTCATGTC TATTGAAACA TGAAATTGAA GTTTCAGTCT AACCCTTATG
  Y
  TTCAGGCCCT TTGAACGGAC AGTTACTATG CATAAGGACA GCAGTGGACA TGTTGGCTTT
  ATCTTTAAAA GTGGAAAAAT CACATCCATA GTAAAAGATA GTTCTGCTGC CAGAAACGGC
  CTCCTCACTG ATCACCACAT CTGTGAGATC AACGGACAGA ACGTCATTGG CTTGAAGGTA
  AGGGACTCAC ATGACCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37867614	NES08667665	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27663393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867614	NES08667665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6392940 () rs orientation: forward

Symbol	Name	Function Class
Sdcbp	syndecan binding protein	within coordinates
Tssr36396	transcription start site region 36396	226 bp upstream
Tssr36397	transcription start site region 36397	708 bp upstream
Tssr36398	transcription start site region 36398	1684 bp upstream
Tssr36399	transcription start site region 36399	1792 bp upstream
Tssr36400	transcription start site region 36400	1918 bp upstream
Tssr36401	transcription start site region 36401	1974 bp upstream