rs27663403 SNP Detail

Summary

• ID
  rs27663403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6388095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCCCT GTCAGAGGAC
  TGAATGTCAC AGAGTTCCTA AGGAATCAGT TTTGAAACCA AATCTGGTCT CTTAGGTGGT
  TGTGCAATTA AGTGAAAGCA CGGCAGGGGG CTGCTTTTAC CTTGGATACT GTGCACAAAA
  GTGACAAAAG TGATGTGCCT ATTTCCTCCC AAGCTCCCAC AAAGTCTAAG ACCAGTATCA
  Y
  ACTGTGAGAG TAAACCTGAA GAGGGGGAGT TTCTTGAACT AAAAAATGAC ATTGATCAAA
  AAATGTTTAT TAAACTCCTA AATATAATGA AGCATGGAAA AGTCTATAAT TTTTTTTATT
  TTAGTGTGTA AAGCAGAATT TCGGGAAAGT TGGACCAGGT CTGGCAAGGC AGCTTTTGTC
  AAGAGTACGC ATTCTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37867624	NES08667834	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27663403					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867624	NES08667834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6388095 () rs orientation: forward

Symbol	Name	Function Class
Rr94705	regulatory region 94705	1306 bp proximal
Sdcbp	syndecan binding protein	within coordinates
Tssr36395	transcription start site region 36395	1024 bp downstream