rs27663404 SNP Detail

Summary

• ID
  rs27663404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6385852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTTCCT CAGACAACAT
  CCTAAAAGGT TAACGACGTG CTGGGTCTTT ACCTCAATTT ATCATTTTCT TTTCTCTTCT
  TTTCTTTTTC TTCCTCCTCC TCCTCTTTCT CCTCCTCCTC CTCTTTCTCC TCCTCTTCTC
  CCTCCTCCTT CTCCTCTTCC TCCTCCACCA TTATCTTACT GGATTCTCTT TCAGTCTAAT
  R
  AATGTTCCTT AGCTCAGTGA TTCCAGCTTT CCACATAGAA AATAAGTATT ACATTATTTA
  ACTGAATGAG GCTGACGAAG GCAGGAAAAG CCAACACTGC CTTTCCACTC AAAAAGCTGA
  GGGCATGATT GTGTGTTGAA GACACATTAT AAAGTCCTGA CCTCACTGAC GCTCGAGTGC
  AGTGTATTTC AGCAGAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37867625	NES08667855	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A		A	A	A	A	A	A	A
ss45636374	mCV22885166	ABI	CRAMUS_MOUSE	f	SNP	A	G			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27663404					SNP	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867625	NES08667855	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6385852 () rs orientation: forward

Symbol	Name	Function Class
Rr105434	regulatory region 105434	1053 bp distal
Sdcbp	syndecan binding protein	within coordinates
Tssr36393	transcription start site region 36393	747 bp downstream
Tssr36394	transcription start site region 36394	334 bp downstream
Tssr36395	transcription start site region 36395	1176 bp upstream