rs27663419 SNP Detail

Summary

• ID
  rs27663419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:6376717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAATGCT AACAATGAAA
  GGCAATAGTT TCCTTTTTTA CATCCCTTCC CTCTAGCTAA AACCATTGCT AAAAATATAG
  ATGGCATATG TTAAGTTTTT CCATATACTA TGAGTATCTT CCTAGTGCAG TTTGCCTGCA
  TACTATTTTC TGTTGGCACT GTTGGTAGAA GGTAATATGT CTGTCCACGC CCAAGAGTGT
  Y
  TTGTGAAAGG CTCTTTCCTG ACCCTGGTTT AGCTGAGGAG TACTGTGTCA GCTGAGGGTA
  AGCCACGTGC TTTTCTTCTT TGATTTTCAC AACTTGTGAA ATGAAGGGAG CTTTTCTTGA
  TGTTTAAAAT CCAAGATGAA TGTAGTTGGG TAGCTGTGGG AACAGAGAGA CAGTTTGGTA
  ACAGCTGTTA AATGTCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37867640	NES08668036	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27663419					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867640	NES08668036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6376717 () rs orientation: forward

Symbol	Name	Function Class
Gm37689	predicted gene, 37689	1301 bp upstream
Sdcbp	syndecan binding protein	within coordinates