rs27664185 SNP Detail

Summary

• ID
  rs27664185
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180288233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGACCT CCACACATGC
  CCATGGCACA CCCATATTGA CATACAGGCA CACTAAATAA ATATATTTTA TAAGTTTGAT
  AAGAGACAAA TGGGAAGAAT GTGTAGTATT AGTGATGAAA TAGTCATGAA GATTAATGAT
  ACAGCAGAGA GCTAAGACCA GTCTTCCATA CGCAGGGCCA GTTGACTACA CAAAGGTGCA
  R
  AACCAACACA ATGGCCCTTT CAACAATGGT CAGAGAAAGA GAATCTCAAC ATGAACCTGG
  AGTCTTACAT GAAGCTTAAC TCAAAGGAAA ACTATAAGCT TCATTTATAA GAGAGTGAAG
  GCAAGCCAAA CATAGCCACA CACTTTTAGC ACTAGCACTT GGGAGACAGA GGCAAGTGAT
  TCTGTGAGTT TGAAGCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37834811	NES08676579	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27664185					SNP	G	G	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834811	NES08676579	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180288233 () rs orientation: forward

Symbol	Name	Function Class
Gm54097	predicted gene, 54097	within coordinates
Rr572803	regulatory region 572803	428 bp proximal