rs27665413 SNP Detail

Summary

• ID
  rs27665413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180717068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAATGG ATCCCTAGAA
  TTGGAAGTCC TTCAGGATAA TGGGAGAAGA AAAAGCCTGA AGCCTGGTAC CAGCCAGAGG
  AAGAAATTCA TTTCACATAC TGTTTCCTAA CAACTTGCCA AACCGTCTTG AAGGAGAGAC
  TGGAGCTGAC AGAATTATGG GCGGGACCAC ACTTTGACCA AAACTGTTTG GTTACACATA
  Y
  CTCTTGCCCC TATTTAAACC TAGGCCTAAT GGCGAGACAT TGAAAATGGA TTTGGTATAT
  GGTGTGAGTA GATTTCTGTA TCTTCCCTAT GTGGTCATAC TGAAGAAGTC TTTGTCTGCT
  TTTATTCCTT CCTGACAGAT TAGCCTATTG AGGATGGGTG GCCAAGCCTA GGTTATTAGG
  AAATACAGAG CCTGGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832837	NES08678747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665413					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832837	NES08678747	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180717068 () rs orientation: forward

Symbol	Name	Function Class
Kcnq2	potassium voltage-gated channel, subfamily Q, member 2	304 bp downstream