rs27665425 SNP Detail

Summary

• ID
  rs27665425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180715940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACCCAA AGGGGACACA
  TGTTTGGTGT CCCCAATCAT CTTTACTCAT TCTCTTAATA ATGACCACCA GGTACCCAGT
  ACAGTGAAGT GGCCCTTCTT CTAACCAGGT ACCCAGTACC TAGTAGGAAT TTCCCAATCT
  TCTGGGTGCA CTGAAAATGT ACTGGCCTTA CTACAGTGGT CATATTAAGT AAGGCAGGTG
  R
  TGCCCTAAAG GAGAAAGTCA AGCAAAGAAA AGGAACAAGA CAGTAGATCC CCATATACTG
  GGCTTCTCTG TGAACAACTC TCGCTAATTA GTCAGGGCTT CTCTGTCCAT CACAGCCAAC
  TCCTAACTTC TAGTCTAATC CCACAGAGAC CTCTAGGATC AGAGCAATGA GGCAGGTACC
  ACTGAGATCA AGGTAATCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832849	NES08678736	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665425					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832849	NES08678736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180715940 () rs orientation: forward

Symbol	Name	Function Class
Kcnq2	potassium voltage-gated channel, subfamily Q, member 2	1432 bp downstream
Rr41645	regulatory region 41645	1340 bp distal
Rr63891	regulatory region 63891	1614 bp distal