rs27667421 SNP Detail

Summary

• ID
  rs27667421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172894190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTACACTG CCCCAGTCAC
  CCGGGGCTCC AGACTGGACC AGGCTCTCCC TGCCTCAGGG CTGTGTCTTC TGCTGCAAGA
  AGCTCCCTCC TCTCCGAGGA CTGACCCCCT ATGCATTTTG GGGTCTCAGC TTAAAAAGTA
  TCTACGTGGG GAGACCTTCC CTGCTGGCCT TCTTTGAAGC AGTATCTATC CGGGCTGGTT
  Y
  GCTGTGGTGT CCCAGGCTTA TAATGGGGCC TGACTGGAGT ATTAGTCACT CCACATAAGT
  GGTCAGAAAG TGAGTAGACC AAGGGCCCAG ACCTCGGCTA CCATGTGCAA GGCCCTGGGT
  TCAATTTTTC AAGCCAAACA ATGAAAGCGA ACCCCTTTTC TTCTGAATTC CAGTCCCCCT
  TTATCAGGGC CCCGAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825357	NES08709155	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667421					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825357	NES08709155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172894190 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	1464 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Rr367393	regulatory region 367393	1543 bp upstream
Rr407004	regulatory region 407004	within coordinates
Rr571827	regulatory region 571827	1475 bp distal
Rr571828	regulatory region 571828	1085 bp distal
Rr571829	regulatory region 571829	1184 bp distal
Rr571830	regulatory region 571830	1331 bp proximal