rs27667423 SNP Detail

Summary

• ID
  rs27667423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA TGACCTGGTG ATATTAAACC
  Y
  TGCTTCAAGC TCGGCTCTCT ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37825359	NES08709233	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C	C	C	T	C		C	C	T	C		C
ss148328593	ENSMUSSNP2347806	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320621374	CHEV_2_172877607	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27667423					SNP	T	T	T	C	C	C	C	C	T	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825359	NES08709233	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893899 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	1173 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Rr367393	regulatory region 367393	1834 bp upstream
Rr407004	regulatory region 407004	within coordinates
Rr571825	regulatory region 571825	1846 bp distal
Rr571826	regulatory region 571826	1970 bp distal
Rr571827	regulatory region 571827	1184 bp distal
Rr571828	regulatory region 571828	794 bp distal
Rr571829	regulatory region 571829	893 bp distal
Rr571830	regulatory region 571830	1622 bp proximal