rs27667425 SNP Detail

Summary

• ID
  rs27667425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGCCAC ATCTAGAGCC
  AGAGATGCTG GGCAGCCACT TGGTCATCCC TTCTTTCCCA GGCCAGGCAA GATCGCAGGG
  CAGGGACAGG GCTCTGGCAG AGGGCACCTG GCTGTCCCCT CCCTTTCCTT AAACTCCATA
  AACTCCAGCT GGGCTGGCCA GGGCAGGATT TTGTTTGCCA AGAAGGCAGG TAGTCAGACA
  R
  TTGAAGGAGG AAGGATGAAG AGGTAGTCAG CAGGTGGGAG AAGACCCTGT CCCCCCCCCC
  CCACACACAC ACACATGCAG CAGGCTGGCC AATACACCAA CCAGCACCTC CCCCCCCCCC
  CCCCCCCCCC ATGCAGCAGG CTGGCCAAAA CACCAACCAG CAGCCCCTGT ACCTGGTCTT
  GGCACCAGAT GAAGCAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825361	NES08709227	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667425					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825361	NES08709227	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893540 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	814 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1877 bp downstream
Rr407004	regulatory region 407004	182 bp proximal
Rr571825	regulatory region 571825	1487 bp distal
Rr571826	regulatory region 571826	1611 bp distal
Rr571827	regulatory region 571827	825 bp distal
Rr571828	regulatory region 571828	435 bp distal
Rr571829	regulatory region 571829	534 bp distal
Rr571830	regulatory region 571830	1981 bp proximal