rs27667426 SNP Detail

Summary

• ID
  rs27667426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CTCCATAAAC TCCAGCTGGG
  Y
  TGGCCAGGGC AGGATTTTGT TTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37825362	NES08709225	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C	T		C	C		C
ss148328582	ENSMUSSNP5560793	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320621371	CHEV_2_172877201	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27667426					SNP	T	T	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825362	NES08709225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893493 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	767 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1830 bp downstream
Rr407004	regulatory region 407004	229 bp proximal
Rr571825	regulatory region 571825	1440 bp distal
Rr571826	regulatory region 571826	1564 bp distal
Rr571827	regulatory region 571827	778 bp distal
Rr571828	regulatory region 571828	388 bp distal
Rr571829	regulatory region 571829	487 bp distal