rs27667428 SNP Detail

Summary

• ID
  rs27667428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACTT TGGGTCTCAA AAGCAGGCTT
  M
  GGGGACTCTA ACTCTGTGCC TGGGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37825364	NES08709223	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	A	A		A	A	C	A		A		A	C	A		C
ss45374598	mCV22953060	ABI	CRAMUS_MOUSE	f	SNP		C	C					A		A
ss148328573	ENSMUSSNP1295018	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A					A
ss320621369	CHEV_2_172876974	CHEVERUD	SCREENING_POP	f	SNP													C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27667428					SNP	C	C	C	C	A	A	A	A	A	A	C	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825364	NES08709223	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893266 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	540 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1603 bp downstream
Rr407004	regulatory region 407004	456 bp proximal
Rr571825	regulatory region 571825	1213 bp distal
Rr571826	regulatory region 571826	1337 bp distal
Rr571827	regulatory region 571827	551 bp distal
Rr571828	regulatory region 571828	161 bp distal
Rr571829	regulatory region 571829	260 bp distal