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rs27667429 SNP Detail
Summary
  • ID
    rs27667429
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:172893164 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGCCA AGGTGCCTGG TATCCAGCAA
    R
    CCCAGCTACT TACCTCTATG CCCTT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37825365 NES08709222 PERLEGEN MM_PANEL2 f SNP A A A G G G G G A G G G A G G
ss45256671 mCV22953059 ABI CRAMUS_MOUSE f SNP A A G G
ss148328568 ENSMUSSNP5455100 ENSEMBL ENSEMBL_Sanger f SNP A A G G
ss320621368 CHEV_2_172876872 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs27667429 SNP A A A A G G G G G G A G A G G G A G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37825365 NES08709222 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:172893164 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm36337 predicted gene, 36337 438 bp upstream
Gm74627 predicted gene, 74627 within coordinates
Gm74628 predicted gene, 74628 1501 bp downstream
Rr407004 regulatory region 407004 558 bp proximal
Rr571825 regulatory region 571825 1111 bp distal
Rr571826 regulatory region 571826 1235 bp distal
Rr571827 regulatory region 571827 449 bp distal
Rr571828 regulatory region 571828 59 bp distal
Rr571829 regulatory region 571829 158 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory