TGCCA AGGTGCCTGG TATCCAGCAA R CCCAGCTACT TACCTCTATG CCCTT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37825365 | NES08709222 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | G | G | G | G | G | A | G | G | G | A | G | G | |||||
ss45256671 | mCV22953059 | ABI | CRAMUS_MOUSE | f | SNP | A | A | G | G | ||||||||||||||||
ss148328568 | ENSMUSSNP5455100 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | G | G | ||||||||||||||||
ss320621368 | CHEV_2_172876872 | CHEVERUD | SCREENING_POP | f | SNP | A | A | ||||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs27667429 | SNP | A | A | A | A | G | G | G | G | G | G | A | G | A | G | G | G | A | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37825365 | NES08709222 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr2:172893164 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm36337 | predicted gene, 36337 | 438 bp upstream | ||||||
Gm74627 | predicted gene, 74627 | within coordinates | ||||||
Gm74628 | predicted gene, 74628 | 1501 bp downstream | ||||||
Rr407004 | regulatory region 407004 | 558 bp proximal | ||||||
Rr571825 | regulatory region 571825 | 1111 bp distal | ||||||
Rr571826 | regulatory region 571826 | 1235 bp distal | ||||||
Rr571827 | regulatory region 571827 | 449 bp distal | ||||||
Rr571828 | regulatory region 571828 | 59 bp distal | ||||||
Rr571829 | regulatory region 571829 | 158 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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