rs27667430 SNP Detail

Summary

• ID
  rs27667430
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172893094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCCCTG ATGGGCAGCG
  GGGATTGTGT TCAGACAGGC CTGGTTCCGG GGACACTTAG TGGATGGAAC CCTTGGCGGA
  CTACTAAACC CATAATGCCC CCTGCTGGGT GGTGTCTAAA GCTGGAAGCC CCAATCCTCA
  CTCTATGTGA CCCAGGGCAG CTGTGTCAGC CCCTCTGGGC TTTATTCTCT ATGTGTTCAC
  S
  ATAGAAGTCC CTTCTGACCA AGATGCACAG ATACTCCAGG AGGCTGCCAA GGTGCCTGGT
  ATCCAGCAAG CCCAGCTACT TACCTCTATG CCCTTTTAAA GATGGCCTAC TAGCCCAGTG
  GGCACAAGTA TCCTTTAAGC CATGGAGACT TTGGGTCTCA AAAGCAGGCT TAGGGGACTC
  TAACTCTGTG CCTGGGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825366	NES08725234	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	C		G	G	G
ss148328563	ENSMUSSNP6978469	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667430					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825366	NES08725234	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172893094 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	368 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1431 bp downstream
Rr407004	regulatory region 407004	628 bp proximal
Rr571825	regulatory region 571825	1041 bp distal
Rr571826	regulatory region 571826	1165 bp distal
Rr571827	regulatory region 571827	379 bp distal
Rr571828	regulatory region 571828	within coordinates
Rr571829	regulatory region 571829	88 bp distal