rs27667432 SNP Detail

Summary

• ID
  rs27667432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172892995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCTGTAG GATATGTGGG
  CTGGACTGGA GGCAGCTACA CTCCCACAAG CGTGACCTAC AAATTCACTC TCAGAGAATT
  CCAGGGTGGC TGGAAGGCAG AGTCCCCTGA TGGGCAGCGG GGATTGTGTT CAGACAGGCC
  TGGTTCCGGG GACACTTAGT GGATGGAACC CTTGGCGGAC TACTAAACCC ATAATGCCCC
  Y
  TGCTGGGTGG TGTCTAAAGC TGGAAGCCCC AATCCTCACT CTATGTGACC CAGGGCAGCT
  GTGTCAGCCC CTCTGGGCTT TATTCTCTAT GTGTTCACGA TAGAAGTCCC TTCTGACCAA
  GATGCACAGA TACTCCAGGA GGCTGCCAAG GTGCCTGGTA TCCAGCAAGC CCAGCTACTT
  ACCTCTATGC CCTTTTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825368	NES08709220	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667432					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825368	NES08709220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172892995 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	269 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1332 bp downstream
Rr407004	regulatory region 407004	727 bp proximal
Rr571825	regulatory region 571825	942 bp distal
Rr571826	regulatory region 571826	1066 bp distal
Rr571827	regulatory region 571827	280 bp distal
Rr571828	regulatory region 571828	within coordinates
Rr571829	regulatory region 571829	within coordinates