rs27667434 SNP Detail

Summary

• ID
  rs27667434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172892766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTTGG ACCTTTGTCC
  TCTCAACGTG GCCTGTAATC CCCTCTGCTT TAGTGGCTCT GACATTAGGA GGTGGGGCTC
  ACATTCTGTG TTTTGGCCCT AGGCAGGTCT GCAGGGCCAT AGGTCATGGG AAAGGGAGGG
  GGACTTAGGG ATGACAGTTT TAGCCTCTCC ACTATGGTGG CCCTGTGACC TGTGGGCCAG
  R
  TGCTACTGTC ACAATTGGCA CTGATAAAGC CGCTGTAGGA TATGTGGGCT GGACTGGAGG
  CAGCTACACT CCCACAAGCG TGACCTACAA ATTCACTCTC AGAGAATTCC AGGGTGGCTG
  GAAGGCAGAG TCCCCTGATG GGCAGCGGGG ATTGTGTTCA GACAGGCCTG GTTCCGGGGA
  CACTTAGTGG ATGGAACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825370	NES08709218	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667434					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825370	NES08709218	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172892766 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	40 bp upstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	1103 bp downstream
Rr407004	regulatory region 407004	956 bp proximal
Rr571824	regulatory region 571824	1987 bp distal
Rr571825	regulatory region 571825	713 bp distal
Rr571826	regulatory region 571826	837 bp distal
Rr571827	regulatory region 571827	51 bp distal
Rr571828	regulatory region 571828	within coordinates
Rr571829	regulatory region 571829	219 bp proximal