rs27667435 SNP Detail

Summary

• ID
  rs27667435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172892176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCCCGG AGGACACACT
  CTCTAGTGGG TTCCCCGTCC TCCTGCAAAG AGGACAGGAG GGGACAGCTG GCACAGGTGC
  CAGAGAACTT TCTCACAAAC ACGCGGAGGT CAGACAAAAC CAAGGTGAGA GTTGATGGGG
  TTGGTCAAAG CTCTGAAGTT TCCTTCCAGG TTCAAGTTTG GGACCAGTGG CTAAAGCCAG
  Y
  CTCAGGCACC GACAGGGCGG CCCTGACAGT GAGGCTCCCC CTCCCCCATT GCCACACTGT
  TCCCTGAAAG GTTGGAATCT CTTTCCTTGC CCTCTCCTCT CATCCCTTCC CCCACTTCTG
  CCTTTTCCTG CATTACCAGC TGCCCCCTAC CCAGAGCATC AGCTCTGATA CCCGCCCCAC
  CCCCACCCCC TATACACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825371	NES08709217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667435					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825371	NES08709217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172892176 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	within coordinates
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	513 bp downstream
Rr407004	regulatory region 407004	1546 bp proximal
Rr571824	regulatory region 571824	1397 bp distal
Rr571825	regulatory region 571825	123 bp distal
Rr571826	regulatory region 571826	247 bp distal
Rr571827	regulatory region 571827	165 bp proximal
Rr571828	regulatory region 571828	540 bp proximal
Rr571829	regulatory region 571829	809 bp proximal