rs27667438 SNP Detail

Summary

• ID
  rs27667438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCTCTG CTTGGCGGCA AAGGCAAGCT ATGCTTTTAG
  TGACATGCCC CAGCTTGCAG CTGGGGTCCC TGGGGATCTG CCTTCAGTGG TGGGTTCAGA
  R
  CGGCTGAGCC CAGTCACCAA CCCAGGCAGC TCTCTATGCC CTCTATCCTC ACAGAACCAA
  GTGAGCACCC TGACCCTGGG GACCGACAGC TGGGGGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825374	NES08709213	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G		G	G	A	G	G	G	A	G	A
ss45358457	mCV22952862	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				A		G
ss148328548	ENSMUSSNP3691607	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667438					SNP	A	A	A	A	G	G	A	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825374	NES08709213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891773 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	within coordinates
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	110 bp downstream
Rr407004	regulatory region 407004	1949 bp proximal
Rr571824	regulatory region 571824	994 bp distal
Rr571825	regulatory region 571825	within coordinates
Rr571826	regulatory region 571826	135 bp proximal
Rr571827	regulatory region 571827	568 bp proximal
Rr571828	regulatory region 571828	943 bp proximal
Rr571829	regulatory region 571829	1212 bp proximal