rs27667439 SNP Detail

Summary

• ID
  rs27667439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGCCTT TAACCACTGT
  GCTTTGTGTC TTTTCTGAGA GCCCTGTCCT GCTGATGACC AGGTGACATG GTAGAGCCAG
  GGTTCAAACC AAGCAGAGTC CTGTACTAGG GAGATACAGA CAGTTTCCGG AGGGTGCTGT
  CACCAGGGGA CACCTGCAAA TAAACAAACA AACAAAAAAA GGACTGTTTT CTTTCCTCTG
  Y
  TTGGCGGCAA AGGCAAGCTA TGCTTTTAGT GACATGCCCC AGCTTGCAGC TGGGGTCCCT
  GGGGATCTGC CTTCAGTGGT GGGTTCAGAA CGGCTGAGCC CAGTCACCAA CCCAGGCAGC
  TCTCTATGCC CTCTATCCTC ACAGAACCAA GTGAGCACCC TGACCCTGGG GACCGACAGC
  TGGGGGACAC TCAAACCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825375	NES08709211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667439					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825375	NES08709211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891683 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	within coordinates
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	20 bp downstream
Rr571824	regulatory region 571824	904 bp distal
Rr571825	regulatory region 571825	within coordinates
Rr571826	regulatory region 571826	225 bp proximal
Rr571827	regulatory region 571827	658 bp proximal
Rr571828	regulatory region 571828	1033 bp proximal
Rr571829	regulatory region 571829	1302 bp proximal