rs27667441 SNP Detail

Summary

• ID
  rs27667441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCACACAC ACACACACAC
  ACACACACAC ACACACACAC ACAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGGA
  CCAGACAATA GAATCAGCAG AAGTCTGTGA GAAGCTCAGG GCCCTGGCAC ATGTCCCTGA
  GGTGCCCACA CTGTTCAAAG TGCAGACACA GGTCAGTTAC TAGTGCCTTG TAACCACCTA
  Y
  TATCTTCTTT TTAGCTTTTG AGACATGGTC TCATATAACC CAGGCTGGCC TTGACCTTGG
  TAAGTAACTG AAGATGACCT TGAACTTCTT ACGACCCTGC CTCCTCTTCC ACAGTGTTGG
  GATTAGAGGT GTGTGTGGTA CTACGAATGA AACCCAGGAC TTCCTAAGCG ACACTTCACA
  AACTGAGCCA CGGCCACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825377	NES08709252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667441					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825377	NES08709252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891274 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	201 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr571824	regulatory region 571824	495 bp distal
Rr571825	regulatory region 571825	59 bp proximal
Rr571826	regulatory region 571826	634 bp proximal
Rr571827	regulatory region 571827	1067 bp proximal
Rr571828	regulatory region 571828	1442 bp proximal
Rr571829	regulatory region 571829	1711 bp proximal