rs27667442 SNP Detail

Summary

• ID
  rs27667442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGCCA GACTGTCTAG
  CTCCAGGCTC ATAGAGACTT TGTCTGCAAA ACGAGGTGGA TCGTGAGAGA GAAAGATACC
  CAACAGCAGG TCTGTGTCTA CACATGTCCA CACACACACA CACACACACA CACACACACA
  CACACACAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGGACCAGA CAATAGAATC
  R
  GCAGAAGTCT GTGAGAAGCT CAGGGCCCTG GCACATGTCC CTGAGGTGCC CACACTGTTC
  AAAGTGCAGA CACAGGTCAG TTACTAGTGC CTTGTAACCA CCTATTATCT TCTTTTTAGC
  TTTTGAGACA TGGTCTCATA TAACCCAGGC TGGCCTTGAC CTTGGTAAGT AACTGAAGAT
  GACCTTGAAC TTCTTACGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825378	NES08709251	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667442					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825378	NES08709251	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891169 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	306 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr571824	regulatory region 571824	390 bp distal
Rr571825	regulatory region 571825	164 bp proximal
Rr571826	regulatory region 571826	739 bp proximal
Rr571827	regulatory region 571827	1172 bp proximal
Rr571828	regulatory region 571828	1547 bp proximal
Rr571829	regulatory region 571829	1816 bp proximal