rs27667443 SNP Detail

Summary

• ID
  rs27667443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172890855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGTAGC TGGAAAGAAT
  GTCTGACATG CCCTGCCCAC CCTGCTTACA TCAGAAGTGA AAACAAGGAA AGCCACAGAC
  TTTGCCAAAA TGAACCAGAT TTTGAGGCTC AGACCTGCGG ATCAGACATG CTCCATGAAG
  CTTCCCAGCT TCTGTGTAGC CAACCCCATG GCCTTGTCCC AGCCAAGGAG ACAACTCAGA
  R
  GCAACAGTGT CTGAATGGTA TTGTAGAAAA ACAGGAGGGG CAGGGACATG AGTTCAAATC
  CCCAGACCCC CTTGAAAAGC CAGATGTGGT ATCACACGAA TCCCTGGCTC TGCTCAGAGG
  CCAGACTGTC TAGCTCCAGG CTCATAGAGA CTTTGTCTGC AAAACGAGGT GGATCGTGAG
  AGAGAAAGAT ACCCAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37825379	NES08709281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27667443					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825379	NES08709281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172890855 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	620 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr571824	regulatory region 571824	76 bp distal
Rr571825	regulatory region 571825	478 bp proximal
Rr571826	regulatory region 571826	1053 bp proximal
Rr571827	regulatory region 571827	1486 bp proximal
Rr571828	regulatory region 571828	1861 bp proximal