rs27667444 SNP Detail

Summary

• ID
  rs27667444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172890414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC TCAGAGGGTT AAGGTATTTG
  Y
  CACCAAGTGA CCTGGTGGAA CTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37825380	NES08709280	PERLEGEN	MM_PANEL2	f	SNP	C				C	C	C		T	C	T		T
ss45272580	mCV22952840	ABI	CRAMUS_MOUSE	f	SNP		C	C	T	C
ss148328508	ENSMUSSNP2171247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320621360	CHEV_2_172874122	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27667444					SNP	C	C	C	T	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37825380	NES08709280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172890414 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	1061 bp downstream
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr367392	regulatory region 367392	1737 bp downstream
Rr571823	regulatory region 571823	1827 bp distal
Rr571824	regulatory region 571824	within coordinates
Rr571825	regulatory region 571825	919 bp proximal
Rr571826	regulatory region 571826	1494 bp proximal
Rr571827	regulatory region 571827	1927 bp proximal