rs27669335 SNP Detail

Summary

• ID
  rs27669335
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178286349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAATAC CACTCTCCTT
  CCTCCCCACC CTCATCCCTG TCCTCATAGC CCCTGGTTTC TACTCATTCT AATGCTGAGC
  AATCGTGAAG TTCAGGGTCT CAGTCACTAT TTGGCTTTCT AAGGCTTTTT GGTTTTCTGA
  GTAGATTCAT GTCTCTCCTT GAGAACGTGT GCCATCTGTT AGAGCGGTGT GTTTTACCAG
  K
  CAGCTGTTGT GTGCATGAAA GTAGCTTAAT AGAACCACAT CTGGCTTGCC CACTGCCCTG
  TCCCATGCTA CATCTGAGCT CCTTGCCCTA GAGACCATGT TGACATCTGA TGCAATGGAA
  CAGCTCTGAG AGGAAGACCC TCTGGGAGGC GTTTTGGGAT TGATGTCCTC ACAGAAGATG
  AGTTGGGGAG CTCGGGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846858	NES08692357	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669335					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846858	NES08692357	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178286349 () rs orientation: forward

Symbol	Name	Function Class
Rr572445	regulatory region 572445	1099 bp distal
Rr572446	regulatory region 572446	530 bp distal