rs27669338 SNP Detail

Summary

• ID
  rs27669338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178286054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATGAGTT CAAAGCCAAG
  TCTGGCTTAT CACACTGAGG ATTTGGGATG GGAGAGTTTA CAGCTCATTA TCACTACCAG
  CAGGATAATT AGCATCTTCA AAGTCCAGGC TATTACCCAG CTGCCTGACT CTCTCCCACC
  CCACCCCCGC CCCAGGTCCA CCCTCATCAC TGACTTGCAG AGTTTTGAGG CACTCAGCCT
  S
  GAAGCCTCGC AGCCTTGACT TCCATCCCTC TTCTCACCGC CCTCTCCTCC TCACCCACAT
  CTATCTCTAG CATCCTCAGG GGCTCAGCCT TATACCCCAA ATACCACTCT CCTTCCTCCC
  CACCCTCATC CCTGTCCTCA TAGCCCCTGG TTTCTACTCA TTCTAATGCT GAGCAATCGT
  GAAGTTCAGG GTCTCAGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846861	NES08692354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669338					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846861	NES08692354	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178286054 () rs orientation: forward

Symbol	Name	Function Class
Rr572444	regulatory region 572444	1877 bp distal
Rr572445	regulatory region 572445	804 bp distal
Rr572446	regulatory region 572446	235 bp distal