rs27669346 SNP Detail

Summary

• ID
  rs27669346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178285098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATGCT AAATGAAACC
  CCCCTTCAAC CTTGCATGTC TTCCGTCTCC ACAAATCTTC AACTCCACTT TGGTTTAATA
  ATTAACGTGG AAACTGAACT TGGAGAAAGC CTGTCTTGCT CAGCTCTGCT TGTGAGAGCG
  CTGTGAGGAA TACGACTTAT TTTTATTCTA ATCATCGTTT CTCTGGGGAC GTTTGTACCC
  R
  GTAGGATGGT CATAGCACCA GCGTACTGCC ACTTAAAGGG ACCCATCTCT AGATGCCCCA
  CCTGGGCACG GCTGTGTTTG GATGGATGGC GTGCACAGCT GAGAAGGACA GCAAACCCCA
  GGGGATCCGG GAGGCACTGC CTGGCCCTGC CCAGCAAGAA TTAGGAAACC TAAATACCAG
  ATGGCATCCT ATTTGGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846869	NES08692345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669346					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846869	NES08692345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178285098 () rs orientation: forward

Symbol	Name	Function Class
Rr572444	regulatory region 572444	921 bp distal
Rr572445	regulatory region 572445	within coordinates
Rr572446	regulatory region 572446	465 bp proximal