rs27669347 SNP Detail

Summary

• ID
  rs27669347
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178285065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGGGAG GATTAGAGAT
  TCCGTGAAAG GGTTCAGAAT GCTAAATGAA ACCCCCCTTC AACCTTGCAT GTCTTCCGTC
  TCCACAAATC TTCAACTCCA CTTTGGTTTA ATAATTAACG TGGAAACTGA ACTTGGAGAA
  AGCCTGTCTT GCTCAGCTCT GCTTGTGAGA GCGCTGTGAG GAATACGACT TATTTTTATT
  M
  TAATCATCGT TTCTCTGGGG ACGTTTGTAC CCGGTAGGAT GGTCATAGCA CCAGCGTACT
  GCCACTTAAA GGGACCCATC TCTAGATGCC CCACCTGGGC ACGGCTGTGT TTGGATGGAT
  GGCGTGCACA GCTGAGAAGG ACAGCAAACC CCAGGGGATC CGGGAGGCAC TGCCTGGCCC
  TGCCCAGCAA GAATTAGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846870	NES08692344	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	C	C		C	A	C		C
ss148366895	ENSMUSSNP6869547	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320628619	CHEV_2_178377977	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669347					SNP	A	A	A	C	C	C	C	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846870	NES08692344	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178285065 () rs orientation: forward

Symbol	Name	Function Class
Rr572444	regulatory region 572444	888 bp distal
Rr572445	regulatory region 572445	within coordinates
Rr572446	regulatory region 572446	498 bp proximal