rs27669733 SNP Detail

Summary

• ID
  rs27669733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCACCCG CTCTTAAAAG
  CAAAAGCACC CGGGGCTCAA GAGCCTGACC CTACGCGCGG CTCCCACGCC TGCCTCCTGG
  CACCCGGGAG AGGCAGGGGA CCCTCAAGTC AGGCCAAACT GTTCCCAATC TGATCCCAAA
  GCTGAGAGCA AGATTGAGGG CAAGACACCC CATAAAGTCG CTCTGCAGAT ATTGGTCTGT
  Y
  ATCCAGGCTT GCCGGTGACC CCAGCCTCCG GAGCTGCTGT TCACTGAGTG CGGCAGCTGC
  AGCCCTGGGG GGCCCTGGGA GACGCCCCCA CCCCCCAAGC CAGGGTAGCA ACGAGTGGGA
  TGCATGGTTC CAGAGACTGG GAGGCGACCA GAAACCCCAG CTCGAGGAAA CGTGGGCATA
  ACCTCAACAC AAAGTACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ
ss37830956	NES08703977	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ
rs27669733					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830956	NES08703977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	130 bp distal
Cpgi12852	CpG island 12852	713 bp proximal
Gm75644	predicted gene, 75644	480 bp upstream
Rr397552	regulatory region 397552	1943 bp upstream
Rr572060	regulatory region 572060	1716 bp distal
Rr572061	regulatory region 572061	491 bp distal
Rr572062	regulatory region 572062	within coordinates
Rr572063	regulatory region 572063	812 bp proximal
Rr572064	regulatory region 572064	998 bp proximal
Rr572065	regulatory region 572065	1499 bp proximal
Stx16	syntaxin 16	874 bp upstream
Tssr22077	transcription start site region 22077	862 bp upstream
Tssr22078	transcription start site region 22078	1611 bp upstream