rs27669734 SNP Detail

Summary

• ID
  rs27669734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAGCGG GGTCTGGGCT
  GTTTGTCACC TTCCGAGCAG CCCCCGCTGA TCGTCAACCG CTGCGGGGGG AGTGGGCGCC
  CCTGTCTTTA AGGAGCTCGG CATCGGAATC ATCTCTTCTC TATCAGCTCG CACCGCTGCT
  CTCCGGGCCT CGATTCCTCC ATGCATTCAT TGTGTTATGT GTCTCAAAGA TACTTTTCAT
  W
  CGGATACTGT TGCACACAAG CACAGGAGCA CCCGCTCTTA AAAGCAAAAG CACCCGGGGC
  TCAAGAGCCT GACCCTACGC GCGGCTCCCA CGCCTGCCTC CTGGCACCCG GGAGAGGCAG
  GGGACCCTCA AGTCAGGCCA AACTGTTCCC AATCTGATCC CAAAGCTGAG AGCAAGATTG
  AGGGCAAGAC ACCCCATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J
ss37830957	NES08703974	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J
rs27669734					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830957	NES08703974	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	within coordinates
Cpgi12852	CpG island 12852	938 bp proximal
Gm75644	predicted gene, 75644	255 bp upstream
Rr572060	regulatory region 572060	1491 bp distal
Rr572061	regulatory region 572061	266 bp distal
Rr572062	regulatory region 572062	within coordinates
Rr572063	regulatory region 572063	1037 bp proximal
Rr572064	regulatory region 572064	1223 bp proximal
Rr572065	regulatory region 572065	1724 bp proximal
Stx16	syntaxin 16	1099 bp upstream
Tssr22077	transcription start site region 22077	1087 bp upstream
Tssr22078	transcription start site region 22078	1836 bp upstream