rs27669737 SNP Detail

Summary

• ID
  rs27669737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173915843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGTAA TGTGGGTCAG
  AGTCTACATG GGCATGACCA CAAATGAACA GACAGACATG CCTTCTCCCC AGCTCTTAAC
  ACTAGTTCAT GCCCAGAACC CTGTGCTTCC ACGGGGCTAG GGCTCAGCTG CTCCCGGCTG
  CCTTCCTTCC GGCTGGCTCC TGTGCTCAGC TCCTGGTTTC TTCATCTCCC TGTTGCTGAG
  Y
  TCTGGAGTTG CTTGAGGTGC CTGTTTTGAG AATAAGAGGA TTCTTGTTCT ATTCTTCATA
  TGTGCGAAAG CTGTTCATTT CTCTCAAAGA GATGCAAGCT TGGTTGGTTT CTTAAATGTC
  CAACAAGATT TAAGATTATT TATTTAAGAT TCACCAGGAA GGGTCGTCAT CATGGACTGG
  AACACACCAC CAGGAATAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830960	NES08703968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669737					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830960	NES08703968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173915843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	959 bp proximal
Gm75644	predicted gene, 75644	within coordinates
Rr572060	regulatory region 572060	332 bp distal
Rr572061	regulatory region 572061	373 bp proximal
Rr572062	regulatory region 572062	894 bp proximal