rs27669740 SNP Detail

Summary

• ID
  rs27669740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173915427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCATC TTGTCAAGCC
  ACTAACCTGT TCTTAAGAGC CTGCTCCTGC TGGCAGCCTG GCTTCACAGT CTATGTTTAT
  GGCCCCCTTC GGGCACTGAT TAGAAGGATA AGTAGACACT GGAACACTTG TTCTCAAAAG
  GGACTTCTTG GACCCACTGG CAAAACATTA GAGAGTGGGT CTGAAGCCCA AGAAACAAGA
  Y
  ACCAAGGCTC TGTAAGCTTA GGGAGTATTG CAGAATCCTA CCCCGGGCCA AGAGTGAGTC
  ACAGTGAAAG CTTTTAAAAT ATAAAACCAT CAACCTAGAT TTCAGTTTCA GGGTAACACA
  TACACGGCTA TGCTTAAAAA AAAATCTGAA GCTACTTGAC AGAAAAATAA AACAGCTAAG
  AACATTGGAA TATAATGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830963	NES08703963	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669740					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830963	NES08703963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173915427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	1375 bp proximal
Gm75644	predicted gene, 75644	72 bp downstream
Rr572060	regulatory region 572060	within coordinates
Rr572061	regulatory region 572061	789 bp proximal
Rr572062	regulatory region 572062	1310 bp proximal