rs27669743 SNP Detail

Summary

• ID
  rs27669743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173915226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGATAG CGTTCAGTTC
  CCATAACTAT GCCTTCCTTT TTGGGAGTGT GGAACCAAAC CAGTGCTTTC AGATGGCTGG
  ACTGCTGCAG GAACAGATTC CCATCATGCT CGCTGGGTTG AGCTGGGATT AAGGGCTTTC
  CCAGCCACAG CATCTCCTTT ACATTTCTTT CCAAAAAAAC TGTGTGAATC TCACAGTGCT
  R
  GGAACCCATC TTGTCAAGCC ACTAACCTGT TCTTAAGAGC CTGCTCCTGC TGGCAGCCTG
  GCTTCACAGT CTATGTTTAT GGCCCCCTTC GGGCACTGAT TAGAAGGATA AGTAGACACT
  GGAACACTTG TTCTCAAAAG GGACTTCTTG GACCCACTGG CAAAACATTA GAGAGTGGGT
  CTGAAGCCCA AGAAACAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830966	NES08703957	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669743					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830966	NES08703957	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173915226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	1576 bp proximal
Gm75644	predicted gene, 75644	273 bp downstream
Rr572060	regulatory region 572060	within coordinates
Rr572061	regulatory region 572061	990 bp proximal
Rr572062	regulatory region 572062	1511 bp proximal