rs27669745 SNP Detail

Summary

• ID
  rs27669745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173914811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAATTGA ATTGTCTAGG
  ACAGAAGGCT AATGGAGTCT GCATGAAACC AAACCTATGC CTCTTACCAT TCTCCGCAGT
  GGGATGAGCA TCAGAGCTGA AGGCAGAGCT GCGGTGCTTT CTGGGGGTCA GAAACCCTTG
  AGGTTGTAAG CAACAATTTA GGTGGACAGA ATACAAAGCT ACTGTTTCCT GAGTCTGCCT
  K
  GCCTGCCTGT CAGATCTGTG CAAGGAAGCC ATTTCATAGG CATAGGGAGC TTAGGAATGT
  TTGCTGCTCA TCTGGGTGAG AGAATGGCCA CCTGCCTTTT TAAAAGGTCA AAAGTCAGTG
  GTGTCCATTG GGACTAGCTA AACTCCCTTC TTATGAAGGA GCATTACAGA CACATCTGGA
  TTCCCAAACC ATTAAACAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830968	NES08703953	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669745					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830968	NES08703953	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173914811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	1991 bp proximal
Gm75644	predicted gene, 75644	688 bp downstream
Rr572060	regulatory region 572060	87 bp proximal
Rr572061	regulatory region 572061	1405 bp proximal
Rr572062	regulatory region 572062	1926 bp proximal