rs27669746 SNP Detail

Summary

• ID
  rs27669746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173914723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCCTT GAGGGCAAGA
  GTTTGGGTCA GTTTGTCCCC TTTGACCAAC AGCTAGCCCC TGCCACCAGC AGGATTTGAG
  AAACGCTTAT AGAATTGAAT TGTCTAGGAC AGAAGGCTAA TGGAGTCTGC ATGAAACCAA
  ACCTATGCCT CTTACCATTC TCCGCAGTGG GATGAGCATC AGAGCTGAAG GCAGAGCTGC
  R
  GTGCTTTCTG GGGGTCAGAA ACCCTTGAGG TTGTAAGCAA CAATTTAGGT GGACAGAATA
  CAAAGCTACT GTTTCCTGAG TCTGCCTGGC CTGCCTGTCA GATCTGTGCA AGGAAGCCAT
  TTCATAGGCA TAGGGAGCTT AGGAATGTTT GCTGCTCATC TGGGTGAGAG AATGGCCACC
  TGCCTTTTTA AAAGGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37830969	NES08703951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669746					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37830969	NES08703951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173914723 () rs orientation: forward

Symbol	Name	Function Class
Gm75644	predicted gene, 75644	776 bp downstream
Rr572060	regulatory region 572060	175 bp proximal
Rr572061	regulatory region 572061	1493 bp proximal