rs27670469 SNP Detail

Summary

• ID
  rs27670469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181509484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCAGTGC GTGATTCCTC
  TATAGAGGAA TATACAGATC TTCTATGTTA ACAGTTATCA TTAGCTAGGT GTGGTAGTGC
  AACTGAGAGA TGGACACAGG AAAATCAGGA GTTCAATTTT ATCTTAGCTA CATAGTGACT
  TTGAGGCCTT CCTCAAGAAC CTGTTTTATA AAAGCAACAA AAGCCCTGGA AGTTGAGAAT
  K
  AGTAGAGGCT TAAAATTTTT GTTTGTTTGT TTTTAATCTG TTTATCTTTA AGGTAGAATT
  CCCTATGTAT TCCAGGCTGG CTTTATAGCA AGCCTCTTAT TTCAGTTTCC CACGTGCTAG
  ATTATAGCTG TGTGCTACCT CAGTGGGTGT GTATTTCTGT TACATTCCCA CAAACAGACT
  ATAATAGACC CTTCCCATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37849794	NES08676235	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27670469					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37849794	NES08676235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181509484 () rs orientation: forward

Symbol	Name	Function Class
Polr3k	polymerase (RNA) III (DNA directed) polypeptide K	within coordinates
Rr41733	regulatory region 41733	284 bp distal
Rr56343	regulatory region 56343	1883 bp distal
Rr60538	regulatory region 60538	84 bp distal