rs27670471 SNP Detail

Summary

• ID
  rs27670471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181506610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTCGAAGCC CCCCCACCCC CCTCTAGCTC TCCGTTGCCC
  ACTTTGTGAT ACTCCGAAAA TTGTGAGAAT TTTAGTTCAT ACCTTTTAAA CCTACACTCC
  Y
  CTCGTGCTGT CCTTGGCGTA CCAGTCCGCG CCTCGCCTCT GATTTGAAAT CCTTGGGTTC
  TTCTTGTGGC TCTTTTGCTC CCAGCCCCTG TCGTTATTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37849796	NES08724666	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T	T	T	C	T	T	C	C	T	T
ss45305930	mCV23057208	ABI	CRAMUS_MOUSE	f	SNP	C	T						T
ss148404636	ENSMUSSNP3598001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27670471					SNP	C	T	T	C	T	T	T	T	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37849796	NES08724666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181506610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12941	CpG island 12941	within coordinates
Gm57457	predicted gene, 57457	591 bp upstream
Polr3k	polymerase (RNA) III (DNA directed) polypeptide K	within coordinates
Rr41733	regulatory region 41733	1991 bp proximal
Rr56343	regulatory region 56343	within coordinates
Rr60538	regulatory region 60538	1591 bp proximal
Rr397596	regulatory region 397596	350 bp downstream
Tssr22352	transcription start site region 22352	379 bp downstream
Tssr22353	transcription start site region 22353	353 bp downstream
Tssr28245	transcription start site region 28245	584 bp upstream