rs27678274 SNP Detail

Summary

• ID
  rs27678274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5644821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAGGTC ATCCCGTGGG
  CGCGTCACTG TGCTGTCAGT TCCTGCGGGA ATGCAGATCC CGGGGCTCTG AAAGTTTGTT
  TGCCCCCACC GCCTCCTCCC TCCAGTCCTC CCACAGCTCG GTTGTCTGTT TTCTTTGAAA
  GCATGAGGGT TGGAAATAGA ATAAAATTGG TCCTGGCTCA CTCGTGCCCC TGTCACTTAG
  Y
  GGTGCTCAGA ACTTGGCGAC AATGCTAGGC TGTGAGAAGC TGGTGTCTGT GCTGCCCTCC
  TTTTGTTATA GCAAGGAGCC TGATGGTGAC AAGTCTTTCC GTGGTGGCCA GCAAAGAAGG
  AAGAGGGGAT AACTTTGCCT TATTACTTCC CAAAGTGGGA ATAAAACCAC CGGACTCCCA
  GCTTTTTTGA CCCTTTAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	FVB/NJ	PWD/PhJ
ss37869793	NES08672818	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	FVB/NJ	PWD/PhJ
rs27678274					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37869793	NES08672818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5644821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13998	CpG island 13998	within coordinates
Fam110b	family with sequence similarity 110, member B	within coordinates
Tssr36378	transcription start site region 36378	692 bp downstream
Tssr36379	transcription start site region 36379	610 bp downstream
Tssr36380	transcription start site region 36380	581 bp downstream
Tssr36381	transcription start site region 36381	542 bp downstream