rs27678737 SNP Detail

Summary

• ID
  rs27678737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179507054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTCCCC ACACATACCA
  GGGTCTGTCC TCTGTCTTCA CGGACTCTCC TTCTGTGTTC TCTGTCCCCA TCTGTGTCAG
  CAGAAGTCAG AGGAGCCATT TTAGCTGACA CCATGAAACT CCTAAGACAC AGACAGGACA
  GCGAACTTGA GGGTCCAGAG ACAAGAAGGC CTCAGGTCTG GTCAGCTCTG TGCCACAGAG
  Y
  CACCACACAG CTCTTTGTCC ATTCACTCTG CCCTCTGCTG GCATCACATA CGAAAGTCAG
  TACACTAAGG GAAGATAGCT GTCTCTGCTT GTGGCCTCTT GTGAGTGTGA GCATCCCTCA
  GGGACATCCT GTAAACGTCT TTTCTTCAGC CCGACTGGTG ATGGTCACCA CCTGAGCCCA
  GGCCAGTTGC TGGTTGGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37838272	NES08687688	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27678737					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37838272	NES08687688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179507054 () rs orientation: forward

Symbol	Name	Function Class
Cdh4	cadherin 4	Intron
Rr572590	regulatory region 572590	1775 bp distal
Rr572591	regulatory region 572591	25 bp proximal