rs27678740 SNP Detail

Summary

• ID
  rs27678740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179506888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTGGTA GAAAAGAAGT
  CAGTCCAAAA AAAGGAACTA TCTGGCCTTT ATCCCACAGC ATGGTGGGAA AGGCATGTTC
  TGAAGCAGGC TGTGACCTTC CCCAAGCCTC ATGTACCTGT CCCCTGTGTT CCTGCAAATC
  ATCCCTGAAG CCACTGAGGC ACTCTTTTGG CTCCCCACAC ATACCAGGGT CTGTCCTCTG
  Y
  CTTCACGGAC TCTCCTTCTG TGTTCTCTGT CCCCATCTGT GTCAGCAGAA GTCAGAGGAG
  CCATTTTAGC TGACACCATG AAACTCCTAA GACACAGACA GGACAGCGAA CTTGAGGGTC
  CAGAGACAAG AAGGCCTCAG GTCTGGTCAG CTCTGTGCCA CAGAGTCACC ACACAGCTCT
  TTGTCCATTC ACTCTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37838275	NES08687683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27678740					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37838275	NES08687683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179506888 () rs orientation: forward

Symbol	Name	Function Class
Cdh4	cadherin 4	Intron
Rr572590	regulatory region 572590	1609 bp distal
Rr572591	regulatory region 572591	191 bp proximal