rs27678743 SNP Detail

Summary

• ID
  rs27678743
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179506581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCCTC CTGAGAGAGA
  GAGAGGGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC AAGTGAAGGG
  AGTCAACACA AAACAACCCC ACACAGAGCT GTAGGCCTGG CCTCTGCTCT TCCAAATGTC
  TCCTGACTCA AGTGTAGAGT GGGTGAAGTC ACAGGCCCCT TACCTCCCAG CCCTCACGGA
  K
  TGTAGCTCTC AGGGTTCCAG CAGCCCCATG CTATCAGACC TTTGCAAAAA CAAGCCTTTT
  CTGTGGTAAC GACTATTGAT CTTTTTTCTT ATCACAAAAG CTACCTCTCT TTGGTAGAAA
  AGAAGTCAGT CCAAAAAAAG GAACTATCTG GCCTTTATCC CACAGCATGG TGGGAAAGGC
  ATGTTCTGAA GCAGGCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37838278	NES08687677	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27678743					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37838278	NES08687677	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179506581 () rs orientation: forward

Symbol	Name	Function Class
Cdh4	cadherin 4	Intron
Rr572590	regulatory region 572590	1302 bp distal
Rr572591	regulatory region 572591	498 bp proximal