rs27678756 SNP Detail

Summary

• ID
  rs27678756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179504999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCCTGG TCCAGAACAC
  CAGCATCTGT GCGTTCTTCC CATGGGTCCC TGGGGCTGGC TGCCTTTATG AGCTGGAGGT
  AGAACTGGTG CTCACGACAC CTTAGGAGCC ACAGAAAGTC CTTCCATTTC ATTGCCACAA
  AACCCCAGTC TCTTCCCTTG TGAAGCCGCC CATGTGTGCC CAGCACCATG TGCTCACTGG
  R
  CTGAGGGCTC AATGGCTTGG CTCCATAGAG GGACTTGTCA ATTGACCATT GAAGATGCCA
  TTTCCCACCC AGTGAGGATG AGGGATCTGT CCAGGAGGAA GCAGGCTTTA TGCCCTTGGC
  AAGACCCTGA TGTGTTGATG GGTCATGGCT GCTGGGGAGC TCAGGGACAC CCAACCCCTC
  CTTCCTTAAC TCTTCCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37838291	NES08687775	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27678756					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37838291	NES08687775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179504999 () rs orientation: forward

Symbol	Name	Function Class
Cdh4	cadherin 4	Intron
Rr572590	regulatory region 572590	259 bp proximal